Information for 9-CGCATCAGGG (Motif 22)

A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T A C T G C G T A A C G T A C T G A G T C A C T G
p-value:1e-4
log p-value:-9.558e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.33%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.5 +/- 19.0bp
Average Position of motif in Background49.7 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCATCAGGG--
CACAGCAGGGGG
 A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGCATCAGGG----
DCHCAGCAGGRGGCC
 A C G T A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGCATCAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGCATCAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CGCATCAGGG---
-GCCTCAGGGCAT
 A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGCATCAGGG--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CGCATCAGGG----
NCGCAGCGGGGGGTC
 A C G T A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGCATCAGGG----
CACAGCGGGGGGTC
 A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGCATCAGGG---
-SCCTSAGGSCAW
 A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

SPDEF/MA0686.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGCATCAGGG-
TACATCCGGGT
 A G T C A C T G A G T C C G T A A C G T A G T C C G T A A C T G A C T G A C T G A C G T
G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T