Information for 4-RGKGGCAGGASTMCTM (Motif 12)

C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
Reverse Opposite:
A C T G C G T A A C T G A C G T C T G A A T G C G A C T A G T C A G T C A C G T A C T G A G T C A G T C G T C A A T G C A G C T
p-value:1e-9
log p-value:-2.273e+01
Information Content per bp:1.857
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.6 +/- 22.9bp
Average Position of motif in Background47.0 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SP2/MA0516.1/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----RGKGGCAGGASTMCTM
GGGNGGGGGCGGGGC-----
 A C G T A C G T A C G T A C G T C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RGKGGCAGGASTMCTM
---GGGAGGACNG---
 C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RGKGGCAGGASTMCTM
--SDGCAGGTGCNS--
 C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-RGKGGCAGGASTMCTM
TNNGGGCAG--------
 A C G T C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---RGKGGCAGGASTMCTM
NAGANTGGCGGGGNGNA--
 A C G T A C G T A C G T C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:RGKGGCAGGASTMCTM
GGGGGCGGGGC-----
 C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:RGKGGCAGGASTMCTM
---GACAGGTGTN---
 C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
A C G T A C G T A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RGKGGCAGGASTMCTM
AGGGGGCGGGGCTG---
 A C G T C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RGKGGCAGGASTMCTM
-CWGGCGGGAA-----
 C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
A C G T T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----RGKGGCAGGASTMCTM
NNTNAGGGGCGGNNNN----
 A C G T A C G T A C G T A C G T C T G A A T C G A C G T A C T G A C T G A G T C C G T A A C T G A C T G C G T A T A C G A G C T T G C A A G T C A C G T G T A C
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T A C G T A C G T A C G T A C G T