Information for 4-AGGGCTATCA (Motif 11)

C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A
Reverse Opposite:
C G A T T A C G T C G A G A C T C G T A T C A G A T G C T G A C G A T C A C G T
p-value:1e-8
log p-value:-1.962e+01
Information Content per bp:1.696
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif8.21%
Number of Background Sequences with motif533.4
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets47.7 +/- 21.9bp
Average Position of motif in Background48.0 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0059.1_Six6_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AGGGCTATCA-----
AATAGGGTATCATATAT
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PH0166.1_Six6_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGGGCTATCA-----
AATAGGGTATCAATATT
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PH0161.1_Six1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGGCTATCA-----
GATGGGGTATCATTTTT
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

PH0162.1_Six2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGGCTATCA-----
AATGGGGTATCACGTTT
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

Six3/MA0631.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGGCTATCA-----
GATAGGGTATCACTAAT
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGGCTATCA-----
GATAGGGTATCACTAAT
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGGGCTATCA-
AAGGATATNTN
 C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PH0165.1_Six6_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGGCTATCA-----
AATAGGGTATCAATTAT
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGGGCTATCA-
---GCTGTCAA
 C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A A C G T
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCTATCA
CNAGGCCT----
 A C G T A C G T C G T A C T A G A C T G A T C G A G T C G C A T C T G A A G C T A T G C G C T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T