Information for 12-GACCHGACTA (Motif 28)

A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C G T A G T C C A G T A T C G A C T G A C G T G T A C
p-value:1e-4
log p-value:-9.280e+00
Information Content per bp:1.811
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif16.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets60.6 +/- 22.8bp
Average Position of motif in Background60.8 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GACCHGACTA
--BCAGACWA
 A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GACCHGACTA-
NNCNTGACCCCGCTCT
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GACCHGACTA---
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PH0104.1_Meis2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GACCHGACTA---
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GACCHGACTA
--CCAGACAG
 A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GACCHGACTA-
NNNNTGACCCGGCGCG
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GACCHGACTA
TACGTGCV--
 A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GACCHGACTA---
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACCHGACTA
GCGACCACACTG
 A C G T A C G T A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GACCHGACTA
GGGTACGTGC---
 A C G T A C G T A C G T A C T G C G T A A G T C T A G C G T A C A C T G G T C A A G T C C G A T C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T