Information for 7-TWACAATCAA (Motif 20)

A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A
Reverse Opposite:
C G A T A G C T A C T G C G T A A C G T A C G T A C T G A C G T G C A T C G T A
p-value:1e-6
log p-value:-1.534e+01
Information Content per bp:1.882
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.64%
Number of Background Sequences with motif46.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets50.1 +/- 29.5bp
Average Position of motif in Background54.6 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TWACAATCAA
NAACAAT---
 A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.79
Offset:2
Orientation:forward strand
Alignment:TWACAATCAA
--CCAATCAA
 A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

SRY/MA0084.1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TWACAATCAA
GTAAACAAT---
 A C G T A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---TWACAATCAA--
NNNTAACAATTATAN
 A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TWACAATCAA
-AACAAT---
 A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TWACAATCAA---
AATGAACAATGGAATT
 A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TWACAATCAA---
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----TWACAATCAA-
NNTNANAACAATTNNA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TWACAATCAA---
TAGTGAACAATAGATTT
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TWACAATCAA-
CCATCAATCAAA
 A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G T C C T G A G C T A A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A