Information for 6-CGCTGTGTTAAAATRC (Motif 8)

G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
Reverse Opposite:
A T C G G A T C C G T A A C G T C G A T A C G T A C G T C G T A G T C A A T G C T C G A G T A C C G T A C A T G G A T C C T A G
p-value:1e-10
log p-value:-2.438e+01
Information Content per bp:1.674
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.30%
Number of Background Sequences with motif23.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets36.8 +/- 26.4bp
Average Position of motif in Background49.0 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC12/MA0906.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC
---GGTCGTAAAAA--
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
A C G T A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC
----GTCGTAAAAA--
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
A C G T A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC-
TAAGGTCGTAAAATCCT
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC
TAAAGTCGTAAAACAT
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC
----GTCGTAAAAT--
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC
TAAAGTCGTAAAATAG
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC
TAAAGTCGTAAAACGT
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC
---AGTCGTAAAAA--
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
A C G T A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCTGTGTTAAAATRC-
CAAGGTCGTAAAATCTT
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGCTGTGTTAAAATRC
-NCWRWGTAAACANSV
 G A T C C T A G G T A C G C A T A C T G A C G T A T C G C A G T C G A T C G T A C G T A C G T A C G T A G C A T C T A G A T G C
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G