Information for 4-CCCACAATTCAAG (Motif 5)

A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A T C G C G T A C T G A A C G T A C G T A C T G A C G T A C T G A C T G A C T G
p-value:1e-10
log p-value:-2.470e+01
Information Content per bp:1.941
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.6 +/- 26.2bp
Average Position of motif in Background69.2 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF143/MA0088.2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCCACAATTCAAG-
TACCCACAATGCATTG
 A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCCACAATTCAAG-
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCCACAATTCAAG
ATTTCCCAGVAKSCY--
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCACAATTCAAG----
-AATCAATTCAATAATT
 A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCCACAATTCAAG
NWAACCACADNN----
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCCACAATTCAAG
NNCNNAACAATTNT--
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCCACAATTCAAG
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCCACAATTCAAG
---AAAAGTCAA-
 A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G
A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCCACAATTCAAG-
ATAAACAATTAAACA
 A C G T A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCCACAATTCAAG
--GACAATGNN--
 A G T C A G T C A G T C C G T A A G T C C G T A G T C A A G C T A C G T A T G C G T C A C G T A A C T G
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T