Information for 3-TTBGTCCGTGGTTCTT (Motif 4)

A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T
Reverse Opposite:
G T C A C G T A C T A G G T C A C G T A A G T C A G T C T C G A A G T C A C T G A C T G C G T A A G T C T C G A C T G A G T C A
p-value:1e-13
log p-value:-3.170e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.4 +/- 24.2bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---TTBGTCCGTGGTTCTT--
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TTBGTCCGTGGTTCTT-
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTBGTCCGTGGTTCTT--
-NNNTCCTTTGTTCTNNN
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TTBGTCCGTGGTTCTT
----NCCATTGTTC--
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTBGTCCGTGGTTCTT--
-TNNTCCTTTGTTCTNNT
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TTBGTCCGTGGTTCTT
-----CCATTGTTTT-
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TTBGTCCGTGGTTCTT
-----CCTTTGTT---
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TTBGTCCGTGGTTCTT
-----CCATTGTTYB-
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TTBGTCCGTGGTTCTT
----GCTGTGGTTT--
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TTBGTCCGTGGTTCTT
---GTCTGTGGTTT--
 A C G T A G C T A C G T C T A G A C G T A G T C A G T C T C A G A C G T A C T G A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T