Information for 9-GTCTTTCACCCTTCCT (Motif 20)

A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
Reverse Opposite:
C G T A A C T G A C T G C T G A C G T A A C T G A C T G A C T G A C G T A C T G C G T A C G T A C G T A A C T G C G T A A G T C
p-value:1e-4
log p-value:-1.145e+01
Information Content per bp:1.936
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.5 +/- 11.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTTCACCCTTCCT
TGTCTGDCACCT-----
 A C G T A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTCTTTCACCCTTCCT
CTGTCTGTCACCT-----
 A C G T A C G T A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTCTTTCACCCTTCCT-
--CTTTCANTATGACTV
 A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T A C G T
A C G T A C G T A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GTCTTTCACCCTTCCT
----TTCCCCCTAC--
 A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
A C G T A C G T A C G T A C G T A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTCTTTCACCCTTCCT---
-CCTTCCTTCCTTCCTTCC
 A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T A C G T A C G T A C G T
A C G T A G T C G A T C G A C T C A G T A T G C A G T C A C G T A C G T A T G C G T A C A G C T A G C T G A T C A G T C A G C T A G C T A G T C A G T C

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCTTTCACCCTTCCT
---TTTCACACCT---
 A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GTCTTTCACCCTTCCT
ATTGGACTTTGACCCC----
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C A C G T A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTCTTTCACCCTTCCT
-ACTTTCACTTTC---
 A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTTCACCCTTCCT
TCACTTTCACTTTCN--
 A C G T A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T
G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GTCTTTCACCCTTCCT--
--------CACTTCCTCT
 A C T G A C G T A G T C C G A T A C G T A C G T A G T C G T C A A G T C A G T C A G T C A C G T A G C T G T A C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T