Information for 4-GGAGTTCANGGTAAGA (Motif 5)

A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C C G A T G A C T C T G A T A G C G T A C A G C T C G A T A C T G T C G A C G T A A G T C A C G T T A G C A G T C
p-value:1e-14
log p-value:-3.260e+01
Information Content per bp:1.732
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.7 +/- 11.5bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA
--AGGTCAAGGTCA--
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA
-AAGTTCAAGGTCAGC
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA
--AGGTCAAGGTCA--
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA--
-------CAGGTAAGTAT
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

RXRB/MA0855.1/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA
GGGGTCAAAGGTCA--
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA
GGGGTCAAAGGTCA--
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA
GGGGTCAAAGGTCA--
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T

MYBL1/MA0776.1/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GGAGTTCANGGTAAGA
ACCGTTAACGGT----
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A
C T G A G T A C T A G C C A T G A G C T G C A T C G T A C T G A A G T C A T C G A C T G G A C T A C G T A C G T A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA---
--AGGTCACGGAGAGGTCA
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GGAGTTCANGGTAAGA---
--AGGTCAACTAAAGGTCA
 A C T G A C T G C G T A C T A G G A C T A C G T G T A C C G T A C T G A A C T G A T C G A G C T C G T A C G T A A C T G C T G A A C G T A C G T A C G T
A C G T A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A