Information for 9-AGGCTTCTATGCT (Motif 24)

C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C C G T A A C G T C G T A A T C G C G T A C G T A A C T G A T G C G T A C C G A T
p-value:1e-8
log p-value:-2.052e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 13.8bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGGCTTCTATGCT
--GCTTCC-----
 C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T
A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGGCTTCTATGCT---
NNNNTTGTGTGCTTNN
 C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGGCTTCTATGCT---
-CCATTGTATGCAAAT
 C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTTCTATGCT
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTTCTATGCT
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:forward strand
Alignment:AGGCTTCTATGCT---
-------TATGCAAAT
 C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGGCTTCTATGCT---
NNGCGTGTGTGCNGCN
 C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGGCTTCTATGCT-
NNCGTTGCTATGGNN
 A C G T C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AGGCTTCTATGCT-------
----TTGTATGCAAATTAGA
 C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AGGCTTCTATGCT-------
----TTGTATGCAAATTAGA
 C G T A A C T G A T C G A G T C A C G T A C G T A T G C A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A