Information for 4-GAGTGCTCTCCWTGGG (Motif 3)

C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
Reverse Opposite:
T G A C G A T C G T A C G C T A G C A T C T A G C T A G C G T A T A C G C G T A A C T G A T G C C G T A T A G C G A C T G A T C
p-value:1e-16
log p-value:-3.707e+01
Information Content per bp:1.670
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif28.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets56.6 +/- 24.4bp
Average Position of motif in Background51.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGTGCTCTCCWTGGG------
-GGCGCTGTCCATGGTGCTGAA
 C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGTGCTCTCCWTGGG-----
-GGAGCTGTCCATGGTGCTGA
 C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAGTGCTCTCCWTGGG
CGAACAGTGCTCACTAT---
 A C G T A C G T A C G T A C G T C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GAGTGCTCTCCWTGGG
---NGCTN--------
 C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGTGCTCTCCWTGGG
CNGTCCTCCC------
 C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGTGCTCTCCWTGGG
--AASCACTCAA----
 C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GAGTGCTCTCCWTGGG
---NSCACTYVAV---
 C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGCTCTCCWTGGG
TGACAGCTGTCA-----
 A C G T C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTCTCCWTGGG
TTAAGTGCTT--------
 A C G T A C G T C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:GAGTGCTCTCCWTGGG---
-------TCCCCTGGGGAC
 C A T G C T G A A T C G G C A T A T C G A G T C C G A T A G T C G C A T A G T C G A T C C G T A C G A T A C T G C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C