Information for 1-GGCAAGNGCA (Motif 5)

A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A
Reverse Opposite:
A G C T A C T G A T G C G T C A A G T C C G A T C A G T C A T G A T G C T A G C
p-value:1e-13
log p-value:-3.036e+01
Information Content per bp:1.493
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif6.37%
Number of Background Sequences with motif755.4
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets45.3 +/- 26.1bp
Average Position of motif in Background48.3 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GGCAAGNGCA--
--CAAGGHCANV
 A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGNGCA
AAGGCAAGTGT-
 A C G T A C G T A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGCAAGNGCA
NTCAAGGTCA
 A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGCAAGNGCA
BTCAAGGTCA
 A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GGCAAGNGCA-
-CAAAGGTCAG
 A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGNGCA
AGGTCAAGGTCA
 A C G T A C G T A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGCAAGNGCA--
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Hes2/MA0616.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GGCAAGNGCA
TAACGACACGTGC-
 A C G T A C G T A C G T A C G T A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGCAAGNGCA-
-TCAAGGTCAN
 A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGNGCA-----
TATTCAAGGTCATGCGA
 A C G T A C G T A T C G T A C G G T A C G T C A G C T A T C A G C A G T T A C G T G A C T C G A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A