Information for 1-GTCATGCACACTC (Motif 3)

C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
Reverse Opposite:
A T C G G T C A T A C G A C G T A C T G A G C T A T C G G T A C G C T A A C G T A C T G T C G A G A T C
p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.799
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.7 +/- 22.4bp
Average Position of motif in Background36.9 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTCATGCACACTC
-CCAGGAACAG--
 C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTCATGCACACTC----
-AGCGGCACACACGCAA
 C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C G T A C G T A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTCATGCACACTC----
-CGAAGCACACAAAATA
 C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCACACTC
AGTCACGC------
 A C G T C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTCATGCACACTC
---ATGAATATTC
 C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTCATGCACACTC
---ATGMATATDC
 C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCACACTC
TBGCACGCAA----
 A C G T C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTCATGCACACTC--
CTCATGAATATTCAT
 C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GTCATGCACACTC
GTCATN-------
 C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRF(NRF)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTCATGCACACTC
GCGCATGCGCAC--
 A C G T C T A G A G C T A G T C G T C A C A G T A C T G A T G C C T G A A G T C C G T A A T G C A C G T A T G C
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C A C G T A C G T