Information for 11-CTCTCTCTCHCTCACW (Motif 27)

A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
Reverse Opposite:
C G A T A C T G C G A T A C T G G C T A C T A G C T A G A C T G C T G A T A C G C G T A A T C G C T G A C T A G G T C A T A C G
p-value:1e-3
log p-value:-9.195e+00
Information Content per bp:1.709
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif59.8
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets44.9 +/- 26.9bp
Average Position of motif in Background40.7 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)3.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCTCTCTCHCTCACW
---NCTGTCAATCAN-
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCTCTCTCHCTCACW
ACCACTCTCGGTCAC-
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTCTCTCTCHCTCACW
---SCTGTCAVTCAV-
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTCTCTCTCHCTCACW
-TCACTTTCACTTTCN
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
A C G T G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTCTCTCTCHCTCACW
--GSCTGTCACTCA--
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CTCTCTCTCHCTCACW-
----CTGTCTGTCACCT
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A A C G T
A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CTCTCTCTCHCTCACW
-ACTTTCACTTTC---
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C A C G T A C G T A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CTCTCTCTCHCTCACW
CTTATCTCHMCATCT--
 A C G T A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A
A T G C G A C T C G A T C G T A A C G T A G T C C G A T A G T C G A T C G T C A T A G C C G T A A C G T A G T C C G A T A C G T A C G T

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CTCTCTCTCHCTCACW----
TTATCTGNNNNCNNCAGCNG
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A A C G T A C G T A C G T A C G T
G A C T G C A T C T G A A C G T A G T C C G A T A T C G G A C T A T C G T A G C T A G C T A G C G T A C T A C G G T A C C G T A A T C G T A G C G A T C A C T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:CTCTCTCTCHCTCACW-
-----TGTCTGDCACCT
 A T G C A C G T A G T C A G C T A T G C A C G T A G T C A G C T A G T C G A T C G A T C C G A T G T A C G C T A A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T