Information for 13-GGCATCATGCCTC (Motif 26)

A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
Reverse Opposite:
A C T G C G T A A C T G A C T G A G T C C G T A A G C T A T C G C G T A A C G T A C T G A G T C A G T C
p-value:1e-6
log p-value:-1.500e+01
Information Content per bp:1.929
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.3 +/- 14.7bp
Average Position of motif in Background29.5 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGCATCATGCCTC
TTGGCATGGTGCCA-
 A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGCATCATGCCTC
CTGGCAGNCTGCCA-
 A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGCATCATGCCTC
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GGCATCATGCCTC
WYATGCATWATGCAT-
 A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGCATCATGCCTC
GATGGGGTATCATTTTT-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GGCATCATGCCTC
TNNNNGGTGTCATNTNT-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGCATCATGCCTC
NGTGGGCAT--------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GGCATCATGCCTC
TATTGCATCATCC---
 A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
A C G T T C G A C G A T C A G T C T A G G T A C T C G A C G A T G A T C G T C A A C G T G T A C G A T C A C G T A C G T A C G T

JUN/MA0488.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGCATCATGCCTC
ATGACATCATCNN--
 A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
T C G A A C G T A C T G C T G A A T G C T G C A C G A T G T A C C G T A A G C T G A T C G C A T G C A T A C G T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGCATCATGCCTC
AATAGGGTATCAATATT-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C G T C A A C G T A T G C C T G A A C G T A C T G A G T C A G T C C G A T G T A C
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T A C G T