Information for 3-AGCACAACAG (Motif 16)

G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G
Reverse Opposite:
A G T C A C G T T C A G A C G T C G A T A C T G A G C T A T C G A G T C A C G T
p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.836
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif65.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets50.9 +/- 24.6bp
Average Position of motif in Background57.1 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGCACAACAG---
ATGTCACAACAACAC
 A C G T A C G T G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGCACAACAG----
AACACCAAAACAAAGGA
 A C G T A C G T A C G T G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCACAACAG
RNAACAATGG
 G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGCACAACAG--
CAAACAACAACACCT
 A C G T A C G T A C G T G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGCACAACAG----
GAGCACAGCAGGACA
 A C G T G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGCACAACAG---
CGAAGCACACAAAATA
 A C G T A C G T A C G T G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGCACAACAG-
-GAACAATGGN
 G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.61
Offset:-8
Orientation:reverse strand
Alignment:--------AGCACAACAG--
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCACAACAG---
CTCACACAATGGCGC
 A C G T A C G T G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCACAACAG----
--CACAGCAGGGGG
 G T C A C T A G A T G C C T G A G T A C C G T A T G C A A G T C T C G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G