Information for 9-AGATAGGCAGACAGGC (Motif 15)

C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C
Reverse Opposite:
A C T G A T G C A G T C A C G T A C T G A C G T A T G C A C G T A C T G A G T C A G T C A G C T C T G A A C G T A T G C A C G T
p-value:1e-10
log p-value:-2.502e+01
Information Content per bp:1.867
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.4 +/- 17.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:AGATAGGCAGACAGGC
------CCAGACRSVB
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:AGATAGGCAGACAGGC
------CCAGACAG--
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGATAGGCAGACAGGC--
--AGCGGCACACACGCAA
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C A C G T A C G T
A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGATAGGCAGACAGGC-
---CTGGCAGNCTGCCA
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:AGATAGGCAGACAGGC-----
------SCAGYCADGCATGAC
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGATAGGCAGACAGGC
AGATGKDGAGATAAG-
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGATAGGCAGACAGGC
NNNVCTGWGYAAACASN-
 A C G T A C G T C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AGATAGGCAGACAGGC
------BCAGACWA--
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGATAGGCAGACAGGC--
-CAAATCCAGACATCACA
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGATAGGCAGACAGGC---
---TTGGCANNNTGCCAAG
 C G T A A T C G T C G A A G C T C T G A A C T G A C T G A G T C C G T A A T C G C G T A G T A C C G T A A C T G A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G