Information for 18-CCTATTAGGC (Motif 21)

A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C
Reverse Opposite:
A T C G A T G C A G T C A C G T C T G A G C T A A G C T T G C A A T C G C T A G
p-value:1e-6
log p-value:-1.572e+01
Information Content per bp:1.808
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif88.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets65.1 +/- 25.0bp
Average Position of motif in Background43.8 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTATTAGGC-
CCATATATGGNA
 A C G T A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C A C G T
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

VENTX/MA0724.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCTATTAGGC
ACCGATTAG--
 A C G T A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CCTATTAGGC
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCTATTAGGC--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCTATTAGGC
AAAAACCATTAAGG
 A C G T A C G T A C G T A C G T A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CCTATTAGGC----
------AGGCCTNG
 A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCTATTAGGC--
----CTAGGCCT
 A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCTATTAGGC-
TTCCATATATGGAA
 A C G T A C G T A C G T A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C A C G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------CCTATTAGGC
GATAACATCCTAGTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCTATTAGGC
BCMATTAG--
 A G T C A T G C A C G T T C G A C G A T A G C T C G T A A C T G A T C G A T G C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T