Information for 3-GTCGTAGTTT (Motif 2)

C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T
Reverse Opposite:
C T G A C T G A C T G A A G T C A C G T G T C A G T A C C A T G C T G A G A T C
p-value:1e-44
log p-value:-1.029e+02
Information Content per bp:1.712
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif8.13%
Number of Background Sequences with motif355.6
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets44.0 +/- 28.9bp
Average Position of motif in Background52.8 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCGTAGTTT
NNTGTGGTTT
 C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTCGTAGTTT----
NNATTGGACTTTNGNN
 A C G T A C G T C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T A C G T A C G T A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

POL007.1_BREd/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTCGTAGTTT
---GTTTGTT
 C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T
A C G T A C G T A C G T C T A G A C G T C A G T A C G T A C T G A C G T A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:4
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------GTCGTAGTTT
GNNATTTGTCGTAANN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTCGTAGTTT--
--GGGAATTTCC
 C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T A C G T A C G T
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

PB0161.1_Rxra_2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTCGTAGTTT-----
TCGCGAAGGTTGTACT
 A C G T C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GTCGTAGTTT--
--GGGAATTTCC
 C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T A C G T A C G T
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTCGTAGTTT
GCTGTGGTTT
 C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTCGTAGTTT-
-CTGTGGTTTN
 C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T A C G T
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

HMBOX1/MA0895.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTCGTAGTTT--
--ACTAGTTAAC
 C T A G A G C T G T A C A C T G A C G T G T C A A C T G A G C T A G C T A G C T A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C