Information for 4-GGTGTGAGGTCAC (Motif 5)

A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
Reverse Opposite:
T A C G G A C T T C A G C G T A A T G C A T G C A G C T A G T C T C G A T A G C T G C A G A T C T G A C
p-value:1e-14
log p-value:-3.327e+01
Information Content per bp:1.654
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif206.4
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets49.9 +/- 24.6bp
Average Position of motif in Background53.5 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.76
Offset:4
Orientation:forward strand
Alignment:GGTGTGAGGTCAC
----TRAGGTCA-
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GGTGTGAGGTCAC
AGGGGTCAGAGGTCA-
 A C G T A C G T A C G T A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.71
Offset:4
Orientation:forward strand
Alignment:GGTGTGAGGTCAC
----AGRGGTCA-
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGTGTGAGGTCAC----
NTNNNGGGGTCANGNNN
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GGTGTGAGGTCAC
-NGRTGACGTCAY
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
A C G T T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGTGTGAGGTCAC
GAGGTCAAAGGTCA-
 A C G T A C G T A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:7
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTGTGAGGTCAC
-NRRTGACGTCAT
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
A C G T A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T

CRE(bZIP)/Promoter/Homer

Match Rank:8
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GGTGTGAGGTCAC--
---GTGACGTCACCG
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C A C G T A C G T
A C G T A C G T A C G T T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGTGTGAGGTCAC----
GGCGAGGGGTCAAGGGC
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.69
Offset:6
Orientation:forward strand
Alignment:GGTGTGAGGTCAC
------AGGTCA-
 A C T G C T A G A C G T A T C G A G C T C T A G T C G A T A C G A T C G G C A T A G T C C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T