Information for 15-RCCCRGTSACCMA (Motif 20)

C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
Reverse Opposite:
A C G T A C T G A C T G A C T G A C G T A T C G C G T A A G T C A G T C C T A G A C T G A C T G A G C T
p-value:1e-6
log p-value:-1.494e+01
Information Content per bp:1.870
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.8 +/- 15.4bp
Average Position of motif in Background32.0 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--RCCCRGTSACCMA-
TGACCCAGTGACCTAC
 A C G T A C G T C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

RXRA::VDR/MA0074.1/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---RCCCRGTSACCMA
TGAACCCGATGACCC-
 A C G T A C G T A C G T C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:3
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------RCCCRGTSACCMA-
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-RCCCRGTSACCMA
TGCCCAGNHW----
 A C G T C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RCCCRGTSACCMA
GCCACGTGACC--
 C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:RCCCRGTSACCMA
------TGACCT-
 C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RCCCRGTSACCMA
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RCCCRGTSACCMA
AGGNCANNGTGACCT-
 A C G T A C G T A C G T C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RCCCRGTSACCMA
TACCCTAGTTACCGA
 A C G T A C G T C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RCCCRGTSACCMA--
--CNNTTGACCTTTG
 C T G A A G T C A G T C A G T C C T A G A C T G A C G T A T G C C G T A A G T C A G T C G T A C T C G A A C G T A C G T
A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G