Information for 11-CAGGAGGGTAATT (Motif 14)

A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C G T G T C A A G T C A G T C A G T C A C G T A G T C A G T C A G C T C T A G
p-value:1e-9
log p-value:-2.150e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 34.9bp
Average Position of motif in Background69.8 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0049.1_Hoxa2/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CAGGAGGGTAATT-------
----AAGGTAATTAGCTCAT
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T G C A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A T A C G G A T C G A C T G T A C C G T A C G A T

PH0052.1_Hoxa5/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CAGGAGGGTAATT-------
----ACGGTAATTAGCTCAG
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

PH0022.1_Dlx3/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAGGAGGGTAATT-------
---NNNGGTAATTATNGNGN
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

PH0023.1_Dlx4/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAGGAGGGTAATT-------
---GTCGGTAATTATNGNGN
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

PB0167.1_Sox13_2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAGGAGGGTAATT
GTATTGGGTGGGTAATT
 A C G T A C G T A C G T A C G T A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PH0024.1_Dlx5/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CAGGAGGGTAATT-------
----GGGGTAATTAGCTCTG
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

Dlx1/MA0879.1/Jaspar

Match Rank:7
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CAGGAGGGTAATT---
------NNTAATTANN
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G

Hoxd3/MA0912.1/Jaspar

Match Rank:8
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CAGGAGGGTAATT-------
----ANGNTAATTANCNCAN
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CAGGAGGGTAATT-------
----ANGNTAATTANCNCAN
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

HOXA2/MA0900.1/Jaspar

Match Rank:10
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:CAGGAGGGTAATT---
------GNTAATTANN
 A G T C C T G A A C T G A C T G C G T A A C T G A C T G C T A G A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G