Information for 7-TTGAGCTCCG (Motif 13)

A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G G T C A A C T G A T G C C G A T A G T C C G T A C T G A
p-value:1e-9
log p-value:-2.203e+01
Information Content per bp:1.888
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif51.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets48.1 +/- 25.8bp
Average Position of motif in Background53.8 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.73
Offset:4
Orientation:forward strand
Alignment:TTGAGCTCCG
----GCTCCG
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTGAGCTCCG
-TGACCYCT-
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTGAGCTCCG
CNNTTGACCTTTG
 A C G T A C G T A C G T A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGAGCTCCG
CNGTCCTCCC
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTGAGCTCCG
-TGACCTYA-
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTGAGCTCCG
CTGACCTTTG
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTGAGCTCCG---
NNANTTGACCCCTNNNN
 A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G A C G T A C G T A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTGAGCTCCG
GTGACCTT--
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTGAGCTCCG
TGACCTTGACCT---
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTGAGCTCCG
-TGACCT---
 A G C T A C G T A C T G C G T A A T C G A G T C A C G T A G T C A G T C A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T