Information for 5-CSGTTGCCAYGGBRAC (Motif 7)

A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C
Reverse Opposite:
C T A G A G C T A G T C T G A C A G T C A G T C C T A G A C G T A C T G A C T G A G T C C G T A C T G A A G T C T A G C A C T G
p-value:1e-16
log p-value:-3.708e+01
Information Content per bp:1.789
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif41.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets52.3 +/- 16.5bp
Average Position of motif in Background51.3 +/- 42.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CSGTTGCCAYGGBRAC
CGGTTGCCATGGCAAC
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:CSGTTGCCAYGGBRAC
--GTTGCCATGGNAAC
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:CSGTTGCCAYGGBRAC
-KGTTGCCATGGCAAC
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C
A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.83
Offset:1
Orientation:forward strand
Alignment:CSGTTGCCAYGGBRAC
-NGTTGCCATGGCAA-
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CSGTTGCCAYGGBRAC-
-CGTTGCCATGGCAACG
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:6
Score:0.82
Offset:1
Orientation:forward strand
Alignment:CSGTTGCCAYGGBRAC-
-CGTTGCCATGGCAACG
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CSGTTGCCAYGGBRAC-
-CGTTGCCATGGCAACN
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CSGTTGCCAYGGBRAC-
-CGTTGCCATGGCAACN
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CSGTTGCCAYGGBRAC
-GGTTGCCATGGCAA-
 A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CSGTTGCCAYGGBRAC
NNCGTTGCTATGGNN--
 A C G T A G T C A T C G A C T G G A C T A C G T A C T G A G T C A G T C C G T A G A T C A C T G A C T G A C G T C T A G C T G A A G T C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T