Information for 3-CYGATTGGYCRRCRBB (Motif 3)

A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
Reverse Opposite:
T A C G T A C G G A T C T A C G A G T C A G T C T C A G C T A G A G T C A G T C C G T A G T C A A C G T T A G C T C A G T A C G
p-value:1e-44
log p-value:-1.030e+02
Information Content per bp:1.567
Number of Target Sequences with motif136.0
Percentage of Target Sequences with motif14.59%
Number of Background Sequences with motif1519.0
Percentage of Background Sequences with motif3.41%
Average Position of motif in Targets48.9 +/- 23.5bp
Average Position of motif in Background47.6 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CYGATTGGYCRRCRBB
CCGATTGGCT------
 A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:CYGATTGGYCRRCRBB
CTGATTGGTCNATTT-
 A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:CYGATTGGYCRRCRBB
-TGATTGGCTANN---
 A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.85
Offset:-6
Orientation:forward strand
Alignment:------CYGATTGGYCRRCRBB
AGAGTGCTGATTGGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CYGATTGGYCRRCRBB
TTGATTGN--------
 A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CYGATTGGYCRRCRBB
----TTGGCA------
 A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CYGATTGGYCRRCRBB
ACTCCTAATTAGTCGT----
 A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CYGATTGGYCRRCRBB
TTRAGTGSYK------
 A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CYGATTGGYCRRCRBB
NTAATTGG--------
 A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CYGATTGGYCRRCRBB
NNNNGTTGATTGGGTCG----
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G T C T C A G T C A G A G T C C T A G A T G C A T G C
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G A C G T A C G T A C G T A C G T