Information for 17-AGCCGGCCGGCTGCTT (Motif 27)

C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
Reverse Opposite:
G T C A C T G A A T C G A T G C C G T A A C T G A G T C G A T C A C T G A C T G A G T C A T G C C T A G A C T G A G T C A C G T
p-value:1e-7
log p-value:-1.791e+01
Information Content per bp:1.770
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets61.0 +/- 23.1bp
Average Position of motif in Background49.1 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCCGGCCGGCTGCTT
AGCGCGCC--------
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCCGGCCGGCTGCTT
CAGCC------------
 A C G T C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGCCGGCCGGCTGCTT
-GGCCYCCTGCTGDGH
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGCCGGCCGGCTGCTT
--CTGGCAGNCTGCCA
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:5
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGCCGGCCGGCTGCTT-
-----GCCAGCTGBTNB
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:AGCCGGCCGGCTGCTT
------CCAGCTGTTN
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.50
Offset:6
Orientation:forward strand
Alignment:AGCCGGCCGGCTGCTT
------NCAGCTGCTG
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:AGCCGGCCGGCTGCTT
-------CAGCTGNT-
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGCCGGCCGGCTGCTT--
---TNTCCTGCTGTGNNG
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AGCCGGCCGGCTGCTT
---NNVVCAGCTGBN-
 C G T A A C T G A G T C A G T C A T C G A C T G A G T C G T A C C T A G A C T G G T A C G A C T A T C G A T G C A G C T A C G T
A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T