Information for 7-DGATDVGTBG (Motif 6)

C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G
Reverse Opposite:
A G T C T C G A T C G A A G T C A T G C G T C A T C G A A G C T A T G C G T A C
p-value:1e-18
log p-value:-4.368e+01
Information Content per bp:1.540
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif7.54%
Number of Background Sequences with motif990.2
Percentage of Background Sequences with motif2.10%
Average Position of motif in Targets44.4 +/- 30.0bp
Average Position of motif in Background50.4 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:DGATDVGTBG--
TGATTRATGGCY
 C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:DGATDVGTBG
TGATTGATGA
 C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-DGATDVGTBG-
ATGATKGATGRC
 A C G T C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-DGATDVGTBG----
CTGATTGGTCNATTT
 A C G T C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:DGATDVGTBG-
TGATTTATGGC
 C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------DGATDVGTBG-
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:DGATDVGTBG--
TGATTGGCTANN
 C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-DGATDVGTBG
CCGATTGGCT-
 A C G T C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--DGATDVGTBG
TTTGATTGATGN
 A C G T A C G T C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----DGATDVGTBG--
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T A C G T C A T G T A C G T C G A A G C T C A G T T A C G T C A G A G C T A C G T T C A G A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C