Information for 3-RACCAATGAGAVB (Motif 2)

C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
Reverse Opposite:
T G C A A G T C A C G T A G T C A G C T A T G C C G T A A C G T A C G T A C T G A C T G A G C T G A T C
p-value:1e-96
log p-value:-2.229e+02
Information Content per bp:1.673
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif19.00%
Number of Background Sequences with motif1194.0
Percentage of Background Sequences with motif2.53%
Average Position of motif in Targets50.2 +/- 25.2bp
Average Position of motif in Background46.4 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:RACCAATGAGAVB
AGCCAATCGG---
 C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---RACCAATGAGAVB
ACTAGCCAATCA----
 A C G T A C G T A C G T C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----RACCAATGAGAVB
AAATGGACCAATCAG---
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--RACCAATGAGAVB---
TGGACCAATCAGCACTCT
 A C G T A C G T C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:RACCAATGAGAVB
GAACAATGG----
 C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-RACCAATGAGAVB
VRAACAATGG----
 A C G T C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:forward strand
Alignment:RACCAATGAGAVB
--CCAATTAA---
 C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:forward strand
Alignment:RACCAATGAGAVB
--CCAATTAG---
 C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---RACCAATGAGAVB-
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:RACCAATGAGAVB
TGCCAA-------
 C T A G C T G A A G T C A G T C C G T A C G T A A C G T T A C G C T G A T C A G T G C A T C A G A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T