Information for 15-CTTRTTAKWYKAA (Motif 17)

A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T G T C A C T A G C G T A G T C A A G C T C G T A C G T A A G T C C G T A C G T A C T A G
p-value:1e-10
log p-value:-2.308e+01
Information Content per bp:1.843
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.0 +/- 22.2bp
Average Position of motif in Background34.6 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTTRTTAKWYKAA
NCNTTTGTTATTTNN-
 A C G T A C G T A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTTRTTAKWYKAA
NTNTTGTTGTTTGTN
 A C G T A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

LBX1/MA0618.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTRTTAKWYKAA
CTAATTAA-----
 A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTTRTTAKWYKAA-
CATTGTTATGCAAAT
 A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PH0092.1_Lhx2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTTRTTAKWYKAA
NNNNNCTAATTAGTTTA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTTRTTAKWYKAA
AGCTCATTAT-----
 A C G T A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T A C G T A C G T

PH0031.1_Evx1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CTTRTTAKWYKAA
NNNCACTAATTAGTNNT-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
A C T G G C A T A T G C T A G C T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T C A G T A G T C C G A T A C G T

PH0097.1_Lhx6_2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CTTRTTAKWYKAA
NNNCGCTAATTAGNNGA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
T G C A G C T A G A T C G T A C T C A G G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G C T C A T G A C T G C G T A A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTTRTTAKWYKAA-
CTTTGTTATGCAAAT
 A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PB0022.1_Gata5_1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CTTRTTAKWYKAA
NTNTTCTTATCAGTNTN-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C T A G C G A T A C G T C T G A A C G T G C A T A G T C A C G T C G T A C G T A
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A A C G T