Information for 5-GAGGBCTGTCDHDCTA (Motif 9)

A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
Reverse Opposite:
C G A T C T G A C T A G G A C T C G A T G T A C A T C G T G C A A G T C G T C A A C T G T C G A T G A C G A T C A G C T T G A C
p-value:1e-5
log p-value:-1.289e+01
Information Content per bp:1.625
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif8.00%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets87.0 +/- 2.0bp
Average Position of motif in Background35.9 +/- 13.6bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAGGBCTGTCDHDCTA
----CCTGTCAA----
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GAGGBCTGTCDHDCTA
----GCTGTCAA----
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAGGBCTGTCDHDCTA
----GCTGTG------
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAGGBCTGTCDHDCTA
-----NTGTCAN----
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GAGGBCTGTCDHDCTA
---GSCTGTCACTCA-
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
A C G T A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GAGGBCTGTCDHDCTA
AAGCACCTGTCAATAT-
 A C G T A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T

ZBED1/MA0749.1/Jaspar

Match Rank:7
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GAGGBCTGTCDHDCTA-
----TATGTCGCGATAG
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A A C G T
A C G T A C G T A C G T A C G T G A C T T G C A C G A T C T A G A G C T A G T C C T A G A G T C T C A G C T G A A G C T G C T A C A T G

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GAGGBCTGTCDHDCTA-
-----CNGTCACGCCAC
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GAGGBCTGTCDHDCTA
--GGTCTGGCAT----
 A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GAGGBCTGTCDHDCTA
AAAGACCTGTCAATCC-
 A C G T A C T G C T G A C T A G A C T G A C G T T G A C A C G T C T A G A C G T T A G C C A T G G C T A C A G T G A T C G A C T G C T A
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T