Information for 11-KAGYCMATGGHYCAMY (Motif 20)

A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
Reverse Opposite:
T C G A C A T G C A G T T A C G C T G A C A T G G T A C A T G C C T G A G C A T A C T G A C T G T C A G A G T C A C G T G T A C
p-value:1e-3
log p-value:-8.750e+00
Information Content per bp:1.473
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif16.00%
Number of Background Sequences with motif484.1
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets20.2 +/- 9.5bp
Average Position of motif in Background53.0 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:KAGYCMATGGHYCAMY
-AGCCAATCGG-----
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--KAGYCMATGGHYCAMY
ACTAGCCAATCA------
 A C G T A C G T A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:KAGYCMATGGHYCAMY
ANNTCCATTGTTCNNN
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Myc/MA0147.2/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:KAGYCMATGGHYCAMY
AAGCACATGG------
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--KAGYCMATGGHYCAMY
CTCACACAATGGCGC---
 A C G T A C G T A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:KAGYCMATGGHYCAMY
----CCATTGTTC---
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:KAGYCMATGGHYCAMY
---NCCATTGTTC---
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.51
Offset:5
Orientation:forward strand
Alignment:KAGYCMATGGHYCAMY
-----AATGTATCAAT
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:KAGYCMATGGHYCAMY
-AACAGATGGT-----
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:KAGYCMATGGHYCAMY
-AACAGATGGC-----
 A C T G T C G A C T A G A G T C T G A C T G A C C G T A A G C T A T C G C A T G G A T C G A C T A T G C G T C A G T A C A G C T
A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T