Information for 5-CTTSYMWCAAAAA (Motif 11)

A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
Reverse Opposite:
A C G T G C A T C G A T C G A T C G A T C A T G C G A T C A T G C T A G A T C G C G T A T C G A C T A G
p-value:1e-5
log p-value:-1.220e+01
Information Content per bp:1.652
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif447.2
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets56.8 +/- 31.1bp
Average Position of motif in Background48.2 +/- 37.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0116.1_Elf3_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTTSYMWCAAAAA----
GTTCAAAAAAAAAATTC
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A A C G T A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTTSYMWCAAAAA
---CCAATAAAAA
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTTSYMWCAAAAA
---CCAATAAAAA
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTTSYMWCAAAAA
--NCYAATAAAA-
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTTSYMWCAAAAA
CAATTGCAAAAATAT
 A C G T A C G T A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTTSYMWCAAAAA
---CCAATAAAAC
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTTSYMWCAAAAA
---GTCATAAAAN
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTTSYMWCAAAAA
---GCAATAAAAA
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTSYMWCAAAAA
-TTGCAACATN--
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTTSYMWCAAAAA
--GGTAATAAAAA
 A G T C A G C T C G A T A T G C A G C T G T A C C G T A G T A C C G T A C G T A C G T A C G T A G T C A
A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A