Information for 17-CTCACAGTAC (Motif 40)

A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A G A T C A C G T A C T G A C G T A C T G C G T A A C T G
p-value:1e-7
log p-value:-1.735e+01
Information Content per bp:1.941
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets39.0 +/- 20.0bp
Average Position of motif in Background57.4 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTCACAGTAC
GKVTCADRTTWC
 A C G T A C G T A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTCACAGTAC------
ACTCCAAGTACTTGGAA
 A C G T A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTCACAGTAC
GKMTCADRTTWC
 A C G T A C G T A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTCACAGTAC-
--GACAATGNN
 A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

SREBF1/MA0595.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCACAGTAC
ATCACCCCAC
 A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C
T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

ZNF143/MA0088.2/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTCACAGTAC----
TACCCACAATGCATTG
 A C G T A C G T A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C A C G T A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTCACAGTAC
GTCACATGAY
 A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTCACAGTAC
VGCTGWCAVB--
 A C G T A C G T A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCACAGTAC-----
ATTTACAGTAGCAAAA
 A C G T A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCACAGTAC
CNGTCACGCCAC
 A C G T A C G T A G T C A C G T A G T C C G T A A G T C C G T A C T A G A C G T C G T A A G T C
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C