Information for 5-GAACAATGGR (Motif 4)

C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A
Reverse Opposite:
A G C T A G T C A G T C G C T A C G A T C G A T T A C G A G C T A G C T G A T C
p-value:1e-21
log p-value:-5.039e+01
Information Content per bp:1.700
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif11.55%
Number of Background Sequences with motif1518.0
Percentage of Background Sequences with motif3.16%
Average Position of motif in Targets45.9 +/- 26.8bp
Average Position of motif in Background49.9 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GAACAATGGR
GAACAATGGN
 C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GAACAATGGR
GAACAATGG-
 C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-GAACAATGGR
VRAACAATGG-
 A C G T C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GAACAATGGR
RAACAATGGN
 C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---GAACAATGGR---
AATGAACAATGGAATT
 A C G T A C G T A C G T C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.88
Offset:-5
Orientation:forward strand
Alignment:-----GAACAATGGR--
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----GAACAATGGR---
TAGTGAACAATAGATTT
 A C G T A C G T A C G T A C G T C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.88
Offset:-5
Orientation:reverse strand
Alignment:-----GAACAATGGR--
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:9
Score:0.88
Offset:-6
Orientation:forward strand
Alignment:------GAACAATGGR------
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-GAACAATGGR
RNAACAATGG-
 A C G T C T A G T C G A C T G A A T G C C G T A C G T A C G A T T C A G T C A G T C G A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T