Information for 22-CATTTAAATGAMC (Motif 37)

A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
Reverse Opposite:
C A T G A C T G G A C T A G T C G C T A A C G T G A C T G C A T G C T A C G T A C G T A C A G T A T C G
p-value:1e-8
log p-value:-1.970e+01
Information Content per bp:1.692
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif117.2
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets50.6 +/- 26.7bp
Average Position of motif in Background57.1 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CATTTAAATGAMC
-ATTTGAATT---
 A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAMC--
TAATTCAATGAAGTG
 A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAMC
WATGCAAATGAG-
 A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATTTAAATGAMC
TATAATTATAATATTC
 A C G T A C G T A C G T A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAMC---
ACTATGAATGAATGAT
 A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0064.1_Sox14_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CATTTAAATGAMC
GCTAATTATAATTATC
 A C G T A C G T A C G T A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAMC
TATGCWAATBAV-
 A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CATTTAAATGAMC---
NNAATTAATGACCNNN
 A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CATTTAAATGAMC
ATTTGCATAACAAAG---
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CATTTAAATGAMC
TAAGATTATAATACGG
 A C G T A C G T A C G T A T G C G T C A C G A T G A C T C G A T C G T A C G T A C G T A C G A T C T A G C T G A T G A C G T A C
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G