Information for 11-CCTTTGTCAT (Motif 20)

A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
Reverse Opposite:
C T G A C A G T T C A G G T C A A G T C G C T A T C G A C G T A C T A G T C A G
p-value:1e-12
log p-value:-2.929e+01
Information Content per bp:1.664
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif560.5
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets46.5 +/- 26.8bp
Average Position of motif in Background50.8 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCTTTGTCAT
CCTTTGTTTT
 A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCTTTGTCAT
CCTTTGTT--
 A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCTTTGTCAT
CCWTTGTY--
 A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCTTTGTCAT
CCWTTGTYYB
 A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CCTTTGTCAT
CCATTGTTTT
 A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CCTTTGTCAT
-CTTTGT---
 A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTCAT---
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTCAT---
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCTTTGTCAT
YCTTTGTTCC
 A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CCTTTGTCAT
AGGVNCCTTTGT---
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C A T A G C T C G A T T C A G C A G T A G T C G T C A G A C T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T