Information for 8-GAGACATCAAACA (Motif 10)

A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G A T A C G T A C T G G T C A A C G T A C T G A C G T A G T C A C G T A T G C
p-value:1e-13
log p-value:-3.213e+01
Information Content per bp:1.879
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.5 +/- 22.6bp
Average Position of motif in Background47.8 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGACATCAAACA---
TCACCCATCAATAAACA
 A C G T A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:GAGACATCAAACA--
---CCATCAATCAAA
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAGACATCAAACA
-RGCCATYAATCA
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGACATCAAACA
--GCCATAAATCA
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGACATCAAACA-
--GYCATCMATCAT
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAGACATCAAACA
---TCATCAATCA
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGACATCAAACA----
-GAAGATCAATCACTTA
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

TCF7L2/MA0523.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGACATCAAACA--
-AAAGATCAAAGGAA
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T
A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGACATCAAACA
-GGCCATAAATCA
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Tcf7/MA0769.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGACATCAAACA
-AAAGATCAAAGG
 A T C G C G T A C T A G G T C A A G T C G T C A A C G T A G T C C G T A C G T A C G T A A G T C C G T A
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G