Information for 7-GGGATTAACACCT (Motif 7)

C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
Reverse Opposite:
G C T A C T A G A T C G C A G T A T C G C G A T A C G T T G C A C G T A A G C T A T G C G T A C G A T C
p-value:1e-18
log p-value:-4.364e+01
Information Content per bp:1.672
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif127.5
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets49.9 +/- 22.8bp
Average Position of motif in Background49.8 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.81
Offset:3
Orientation:forward strand
Alignment:GGGATTAACACCT
---ATTAACACCT
 C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTAACACCT
TGAGGGGGATTAACTAT-
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTAACACCT
TTAGAGGGATTAACAAT-
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:4
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTAACACCT
TTAAGGGGATTAACTAC-
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTAACACCT
VRGGATTARN----
 A C G T C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGGATTAACACCT
GGGATTAA-----
 C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGGATTAACACCT
GGGATTANN----
 C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:8
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----GGGATTAACACCT
TGAGGGGGATTAACTAT-
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:GGGATTAACACCT-
----TTMACACCTT
 C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T A C G T
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----GGGATTAACACCT
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T C T A G A C T G T A C G T C G A C G A T A C G T G T C A C G T A A T G C G T C A T A G C G A T C C A G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T