Information for 20-GAGAGCTAACGGG (Motif 24)

A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
Reverse Opposite:
G T A C A G T C G T A C T A C G G A C T A G C T C G T A A C T G A G T C G A C T A G T C C G A T T A G C
p-value:1e-7
log p-value:-1.678e+01
Information Content per bp:1.672
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif223.1
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets42.7 +/- 24.1bp
Average Position of motif in Background49.9 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGCTAACGGG
TTGAGTGSTT-----
 A C G T A C G T A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAGAGCTAACGGG
BTBRAGTGSN------
 A C G T A C G T A C G T A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGCTAACGGG
CTTGAGTGGCT-----
 A C G T A C G T A C G T A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGCTAACGGG
CTYRAGTGSY------
 A C G T A C G T A C G T A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GAGAGCTAACGGG
TTGACCGAGAATTCC----
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T A C G T A C G T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAGAGCTAACGGG
NNGAGATAAGA--
 A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAGAGCTAACGGG
-ANAGATAAGAA-
 A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GAGAGCTAACGGG
CGGAGC-------
 A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGAGCTAACGGG
--CAGCC------
 A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGAGCTAACGGG-
GGGGCCCAAGGGGG
 A T C G C G T A A C T G C T G A C T A G T G A C G C A T T C G A C G T A A T G C C A T G T C A G A C T G A C G T
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G