Information for 17-RGRAGRAAAGGGA (Motif 20)

C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A
Reverse Opposite:
A C G T A G T C G T A C G A T C A G C T C G A T C A G T A G C T T G A C A G C T G A T C A G T C A G C T
p-value:1e-7
log p-value:-1.771e+01
Information Content per bp:1.713
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.04%
Number of Background Sequences with motif322.9
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets48.4 +/- 28.4bp
Average Position of motif in Background48.5 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RGRAGRAAAGGGA
GTAGGGCAAAGGTCA
 A C G T A C G T C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

ZNF263/MA0528.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RGRAGRAAAGGGA------
GGAGGAGGAGGGGGAGGAGGA
 A C G T A C G T C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T G A C A T G T A C G G C T A C A T G T C A G T C G A T C A G C T A G C T A G C T A G T C A G C T G A C T A G C T A G C T G A C T A G C T A G C T G A

IRF2/MA0051.1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:RGRAGRAAAGGGA---------
----GGAAAGCGAAACCAAAAC
 C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RGRAGRAAAGGGA----
-----AAAGRGGAAGTG
 C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G

IRF1/MA0050.2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RGRAGRAAAGGGA--------
AAANNGAAAGTGAAAGTAAAN
 C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C T G A T C A G G C A T T C A G C T G A C T G A C G T A T A C G G A C T C T A G T C G A C T G A C G T A T A C G G A C T T C G A T C G A C T G A C T G A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RGRAGRAAAGGGA
TAGGGCAAAGGTCA
 A C G T C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RGRAGRAAAGGGA
TGGGGCAAAGGTCA
 A C G T C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:RGRAGRAAAGGGA----
-----GAAAGTGAAAGT
 C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:RGRAGRAAAGGGA---
----GWAAYHTGAKMC
 C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:RGRAGRAAAGGGA---
----GWAAYHTGABMC
 C T G A A C T G C T A G C T G A A C T G C T G A G T C A C G T A C T G A C T A G A C T G A C T G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C