Information for 7-CTCTGCAGGAGGC (Motif 2)

A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C
Reverse Opposite:
A T C G A G T C A T G C C G A T A T G C A G T C A C G T A C T G A G T C G C T A C T A G C G T A A C T G
p-value:1e-17
log p-value:-4.114e+01
Information Content per bp:1.846
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.1 +/- 26.8bp
Average Position of motif in Background67.7 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCAGGAGGC-
DCHCAGCAGGRGGCC
 A C G T A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTCTGCAGGAGGC
CACAGCAGGGGG-
 A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTCTGCAGGAGGC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCAGGAGGC
DCTCAGCAGG----
 A C G T A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTCTGCAGGAGGC-
--SDGCAGGTGCNS
 A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C A C G T
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTCTGCAGGAGGC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCAGGAGGC-
NCNCAGCGGGGGGTC
 A C G T A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCAGGAGGC-
NCGCAGCGGGGGGTC
 A C G T A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCTGCAGGAGGC-
CACAGCGGGGGGTC
 A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCTGCAGGAGGC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C A C G T A G T C C G A T A C T G A G T C C G T A A C T G A T C G C G T A A T C G A C T G A T G C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T