Information for 14-GCAATGCTTTHATTAA (Motif 12)

C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A
Reverse Opposite:
A G C T C G A T C G T A C T G A A C G T C A G T C G T A C G T A C G T A C T A G A T G C C G T A A C G T C G A T A C T G A G T C
p-value:1e-9
log p-value:-2.255e+01
Information Content per bp:1.827
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.4 +/- 27.8bp
Average Position of motif in Background53.4 +/- 13.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0095.1_Lhx5/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCAATGCTTTHATTAA----
---ANNATTTAATTAATTNN
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PB0001.1_Arid3a_1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCAATGCTTTHATTAA----
---NNNTTTTAATTAANNNN
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

PH0159.1_Rhox6/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GCAATGCTTTHATTAA-----
----TGCCTTAATTAATGCTC
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T C A G G T A C T G A C G A C T G A C T G C T A T C G A A C G T C G A T C G T A C T G A A G C T A C T G A T G C C G A T G A T C

PH0011.1_Alx1_2/Jaspar

Match Rank:4
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GCAATGCTTTHATTAA-----
----CGCATTAATTAATTGGC
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

PH0090.1_Lbx2/Jaspar

Match Rank:5
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GCAATGCTTTHATTAA-----
----TGCATTAATTAATGCGA
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T A C G G T A C G T C A G A C T G A C T C G T A T C G A A G C T C G A T C T G A C T G A A G C T A C T G T A G C C T A G T C G A

PH0093.1_Lhx3/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCAATGCTTTHATTAA----
---NNTATTTAATTAATTNN
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C A G T C A G T G C T A G C A T G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A A G C T C A G T G C A T A T G C

Arx/MA0874.1/Jaspar

Match Rank:7
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCAATGCTTTHATTAA-----
----TNCATTAATTAATGNAC
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T A G C G T A C C G T A A G C T G A C T C G T A C G T A G A C T C G A T C T G A C T G A G A C T A C T G T A C G T G C A A G T C

PH0003.1_Arx/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCAATGCTTTHATTAA-----
----TNCATTAATTAATGNAC
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T A G C G T A C C G T A A G C T G A C T C G T A C G T A G A C T C G A T C T G A C T G A G A C T A C T G T A C G T G C A A G T C

PH0101.1_Lmx1b/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCAATGCTTTHATTAA----
---AGTTTTTAATTAATTTG
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

LMX1A/MA0702.1/Jaspar

Match Rank:10
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:GCAATGCTTTHATTAA
--------TTAATTAA
 C T A G G T A C C G T A C G T A A C G T A T C G A G T C A C G T A C G T A C G T G C T A C G T A A G C T A C G T C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T G C T A C G T A C G A T G A C T C T G A T C G A