Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-132 | -3.061e+02 | 0.0000 | 116.0 | 14.54% | 205.6 | 0.44% | motif file (matrix) |
svg |
2 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-58 | -1.346e+02 | 0.0000 | 98.0 | 12.28% | 656.7 | 1.39% | motif file (matrix) |
svg |
3 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-36 | -8.365e+01 | 0.0000 | 62.0 | 7.77% | 424.9 | 0.90% | motif file (matrix) |
svg |
4 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-32 | -7.417e+01 | 0.0000 | 66.0 | 8.27% | 583.7 | 1.24% | motif file (matrix) |
svg |
5 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-27 | -6.365e+01 | 0.0000 | 137.0 | 17.17% | 2820.2 | 5.98% | motif file (matrix) |
svg |
6 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-25 | -5.958e+01 | 0.0000 | 50.0 | 6.27% | 410.9 | 0.87% | motif file (matrix) |
svg |
7 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-21 | -4.933e+01 | 0.0000 | 122.0 | 15.29% | 2734.1 | 5.80% | motif file (matrix) |
svg |
8 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-17 | -3.981e+01 | 0.0000 | 75.0 | 9.40% | 1393.9 | 2.96% | motif file (matrix) |
svg |
9 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-17 | -3.947e+01 | 0.0000 | 34.0 | 4.26% | 293.5 | 0.62% | motif file (matrix) |
svg |
10 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-16 | -3.720e+01 | 0.0000 | 62.0 | 7.77% | 1050.0 | 2.23% | motif file (matrix) |
svg |
11 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-14 | -3.292e+01 | 0.0000 | 72.0 | 9.02% | 1487.3 | 3.15% | motif file (matrix) |
svg |
12 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-14 | -3.276e+01 | 0.0000 | 102.0 | 12.78% | 2599.0 | 5.51% | motif file (matrix) |
svg |
13 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-13 | -3.212e+01 | 0.0000 | 91.0 | 11.40% | 2201.2 | 4.67% | motif file (matrix) |
svg |
14 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-12 | -2.986e+01 | 0.0000 | 88.0 | 11.03% | 2176.9 | 4.62% | motif file (matrix) |
svg |
15 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-11 | -2.618e+01 | 0.0000 | 61.0 | 7.64% | 1318.1 | 2.80% | motif file (matrix) |
svg |
16 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-11 | -2.614e+01 | 0.0000 | 46.0 | 5.76% | 820.7 | 1.74% | motif file (matrix) |
svg |
17 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-10 | -2.472e+01 | 0.0000 | 62.0 | 7.77% | 1403.7 | 2.98% | motif file (matrix) |
svg |
18 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-10 | -2.425e+01 | 0.0000 | 40.0 | 5.01% | 681.7 | 1.45% | motif file (matrix) |
svg |
19 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-8 | -1.939e+01 | 0.0000 | 62.0 | 7.77% | 1612.9 | 3.42% | motif file (matrix) |
svg |
20 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-8 | -1.934e+01 | 0.0000 | 50.0 | 6.27% | 1161.5 | 2.46% | motif file (matrix) |
svg |
21 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-8 | -1.900e+01 | 0.0000 | 73.0 | 9.15% | 2071.2 | 4.39% | motif file (matrix) |
svg |
22 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-8 | -1.859e+01 | 0.0000 | 72.0 | 9.02% | 2051.1 | 4.35% | motif file (matrix) |
svg |
23 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-7 | -1.649e+01 | 0.0000 | 49.0 | 6.14% | 1235.6 | 2.62% | motif file (matrix) |
svg |
24 |
| Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer | 1e-7 | -1.638e+01 | 0.0000 | 15.0 | 1.88% | 150.3 | 0.32% | motif file (matrix) |
svg |
25 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-7 | -1.621e+01 | 0.0000 | 59.0 | 7.39% | 1641.7 | 3.48% | motif file (matrix) |
svg |
26 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-6 | -1.415e+01 | 0.0000 | 93.0 | 11.65% | 3251.7 | 6.90% | motif file (matrix) |
svg |
27 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-6 | -1.387e+01 | 0.0000 | 62.0 | 7.77% | 1892.9 | 4.01% | motif file (matrix) |
svg |
28 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-5 | -1.378e+01 | 0.0000 | 28.0 | 3.51% | 573.5 | 1.22% | motif file (matrix) |
svg |
29 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.357e+01 | 0.0000 | 20.0 | 2.51% | 325.6 | 0.69% | motif file (matrix) |
svg |
30 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-5 | -1.245e+01 | 0.0000 | 181.0 | 22.68% | 7779.4 | 16.50% | motif file (matrix) |
svg |
31 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-5 | -1.243e+01 | 0.0000 | 120.0 | 15.04% | 4690.6 | 9.95% | motif file (matrix) |
svg |
32 |
| ETS(ETS)/Promoter/Homer | 1e-5 | -1.243e+01 | 0.0000 | 41.0 | 5.14% | 1104.9 | 2.34% | motif file (matrix) |
svg |
33 |
| Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-5 | -1.216e+01 | 0.0001 | 11.0 | 1.38% | 113.5 | 0.24% | motif file (matrix) |
svg |
34 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.198e+01 | 0.0001 | 189.0 | 23.68% | 8258.2 | 17.51% | motif file (matrix) |
svg |
35 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-5 | -1.182e+01 | 0.0001 | 36.0 | 4.51% | 936.8 | 1.99% | motif file (matrix) |
svg |
36 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-5 | -1.166e+01 | 0.0001 | 14.0 | 1.75% | 194.7 | 0.41% | motif file (matrix) |
svg |
37 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-5 | -1.156e+01 | 0.0001 | 70.0 | 8.77% | 2397.1 | 5.08% | motif file (matrix) |
svg |
38 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-4 | -1.149e+01 | 0.0001 | 93.0 | 11.65% | 3473.0 | 7.37% | motif file (matrix) |
svg |
39 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-4 | -1.142e+01 | 0.0001 | 73.0 | 9.15% | 2544.4 | 5.40% | motif file (matrix) |
svg |
40 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-4 | -1.097e+01 | 0.0002 | 44.0 | 5.51% | 1300.1 | 2.76% | motif file (matrix) |
svg |
41 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-4 | -1.025e+01 | 0.0003 | 128.0 | 16.04% | 5327.7 | 11.30% | motif file (matrix) |
svg |
42 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-4 | -1.024e+01 | 0.0003 | 6.0 | 0.75% | 35.6 | 0.08% | motif file (matrix) |
svg |
43 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-4 | -1.023e+01 | 0.0003 | 36.0 | 4.51% | 1011.2 | 2.14% | motif file (matrix) |
svg |
44 |
| GFY(?)/Promoter/Homer | 1e-4 | -1.015e+01 | 0.0003 | 14.0 | 1.75% | 223.6 | 0.47% | motif file (matrix) |
svg |
45 |
| Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-4 | -9.796e+00 | 0.0005 | 45.0 | 5.64% | 1411.8 | 2.99% | motif file (matrix) |
svg |
46 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-3 | -9.070e+00 | 0.0009 | 149.0 | 18.67% | 6562.2 | 13.92% | motif file (matrix) |
svg |
47 |
| Sp1(Zf)/Promoter/Homer | 1e-3 | -8.886e+00 | 0.0011 | 55.0 | 6.89% | 1918.4 | 4.07% | motif file (matrix) |
svg |
48 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-3 | -7.679e+00 | 0.0035 | 255.0 | 31.95% | 12551.3 | 26.62% | motif file (matrix) |
svg |
49 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-3 | -6.924e+00 | 0.0073 | 42.0 | 5.26% | 1479.0 | 3.14% | motif file (matrix) |
svg |
50 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-2 | -6.879e+00 | 0.0075 | 50.0 | 6.27% | 1853.8 | 3.93% | motif file (matrix) |
svg |
51 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -6.816e+00 | 0.0078 | 34.0 | 4.26% | 1126.5 | 2.39% | motif file (matrix) |
svg |
52 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -6.793e+00 | 0.0078 | 88.0 | 11.03% | 3728.3 | 7.91% | motif file (matrix) |
svg |
53 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.664e+00 | 0.0088 | 12.0 | 1.50% | 247.1 | 0.52% | motif file (matrix) |
svg |
54 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.611e+00 | 0.0091 | 24.0 | 3.01% | 710.0 | 1.51% | motif file (matrix) |
svg |
55 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -6.474e+00 | 0.0102 | 9.0 | 1.13% | 155.3 | 0.33% | motif file (matrix) |
svg |
56 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.311e+00 | 0.0118 | 30.0 | 3.76% | 984.2 | 2.09% | motif file (matrix) |
svg |
57 |
| E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.243e+00 | 0.0124 | 61.0 | 7.64% | 2445.3 | 5.19% | motif file (matrix) |
svg |
58 |
| ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer | 1e-2 | -5.947e+00 | 0.0164 | 24.0 | 3.01% | 747.7 | 1.59% | motif file (matrix) |
svg |
59 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-2 | -5.860e+00 | 0.0176 | 94.0 | 11.78% | 4164.1 | 8.83% | motif file (matrix) |
svg |
60 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.834e+00 | 0.0178 | 42.0 | 5.26% | 1570.2 | 3.33% | motif file (matrix) |
svg |
61 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -5.749e+00 | 0.0190 | 75.0 | 9.40% | 3204.9 | 6.80% | motif file (matrix) |
svg |
62 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -5.747e+00 | 0.0190 | 11.0 | 1.38% | 241.2 | 0.51% | motif file (matrix) |
svg |
63 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.726e+00 | 0.0190 | 18.0 | 2.26% | 509.9 | 1.08% | motif file (matrix) |
svg |
64 |
| NRF(NRF)/Promoter/Homer | 1e-2 | -5.653e+00 | 0.0200 | 32.0 | 4.01% | 1121.9 | 2.38% | motif file (matrix) |
svg |
65 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.367e+00 | 0.0262 | 30.0 | 3.76% | 1052.5 | 2.23% | motif file (matrix) |
svg |
66 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.247e+00 | 0.0290 | 14.0 | 1.75% | 372.9 | 0.79% | motif file (matrix) |
svg |
67 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-2 | -5.242e+00 | 0.0290 | 81.0 | 10.15% | 3582.0 | 7.60% | motif file (matrix) |
svg |
68 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-2 | -5.153e+00 | 0.0310 | 51.0 | 6.39% | 2074.1 | 4.40% | motif file (matrix) |
svg |
69 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.101e+00 | 0.0321 | 109.0 | 13.66% | 5075.0 | 10.76% | motif file (matrix) |
svg |
70 |
| NFY(CCAAT)/Promoter/Homer | 1e-2 | -5.089e+00 | 0.0321 | 44.0 | 5.51% | 1738.4 | 3.69% | motif file (matrix) |
svg |
71 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-2 | -4.767e+00 | 0.0436 | 6.0 | 0.75% | 102.9 | 0.22% | motif file (matrix) |
svg |
72 |
| TATA-Box(TBP)/Promoter/Homer | 1e-2 | -4.754e+00 | 0.0436 | 45.0 | 5.64% | 1823.0 | 3.87% | motif file (matrix) |
svg |