Information for 9-RCTCMRGSCYGSAGSG (Motif 17)

C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G
Reverse Opposite:
A T G C A T C G A G T C A C G T A T G C A G T C C T A G A C T G A T C G A G T C A G C T A C T G A C T G C G T A A C T G A G C T
p-value:1e-8
log p-value:-2.041e+01
Information Content per bp:1.830
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.5 +/- 20.1bp
Average Position of motif in Background49.5 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:RCTCMRGSCYGSAGSG--
-----TGCCCTNAGGGCA
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:2
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:RCTCMRGSCYGSAGSG--
-----TGCCCTNAGGGCA
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:3
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:RCTCMRGSCYGSAGSG--
-----TGCCCNNAGGGCA
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:RCTCMRGSCYGSAGSG
---------CGGAGC-
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:5
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:RCTCMRGSCYGSAGSG-
-----TGCCCNGGGGCA
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----RCTCMRGSCYGSAGSG
AGCCACTCAAG---------
 A C G T A C G T A C G T A C G T C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.48
Offset:4
Orientation:forward strand
Alignment:RCTCMRGSCYGSAGSG
----ATGCCCTGAGGC
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G
A C G T A C G T A C G T A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-RCTCMRGSCYGSAGSG
GGCTCYAKCAYC-----
 A C G T C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:RCTCMRGSCYGSAGSG
----WTGSCCTSAGGS
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G
A C G T A C G T A C G T A C G T G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.48
Offset:5
Orientation:forward strand
Alignment:RCTCMRGSCYGSAGSG
-----GGGCGGGAAGG
 C T G A A G T C A C G T A G T C G T A C C T A G A C T G A T G C A G T C A G T C A C T G A T C G C G T A A C T G A T G C A T C G
A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G