Homer Known Motif Enrichment Results (hs_EmbryonicEndoderm_HUES64_normal_PAX6_SRX702055_homermotifs_10_13_16)

Homer de novo Motif Results
Gene Ontology Enrichment Results
Known Motif Enrichment Results (txt file)
Total Target Sequences = 720, Total Background Sequences = 48242
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File SVG
1 A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer1e-65-1.509e+020.000063.08.75%159.20.33%motif file (matrix) svg
2 A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-36-8.449e+010.0000179.024.86%4193.88.78%motif file (matrix) svg
3 A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-36-8.316e+010.0000184.025.56%4444.79.30%motif file (matrix) svg
4 C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer1e-33-7.789e+010.0000131.018.19%2545.05.33%motif file (matrix) svg
5 A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-32-7.556e+010.0000170.023.61%4125.78.63%motif file (matrix) svg
6 C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer1e-32-7.465e+010.000080.011.11%999.82.09%motif file (matrix) svg
7 T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-32-7.375e+010.000085.011.81%1150.22.41%motif file (matrix) svg
8 A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer1e-30-7.099e+010.0000102.014.17%1718.33.60%motif file (matrix) svg
9 A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer1e-30-7.085e+010.0000102.014.17%1721.13.60%motif file (matrix) svg
10 A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-29-6.902e+010.0000111.015.42%2065.74.32%motif file (matrix) svg
11 A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer1e-25-5.822e+010.0000100.013.89%1956.54.09%motif file (matrix) svg
12 G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-21-5.031e+010.000042.05.83%387.30.81%motif file (matrix) svg
13 C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-19-4.601e+010.0000315.043.75%13166.827.55%motif file (matrix) svg
14 G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-14-3.285e+010.0000169.023.47%6144.212.86%motif file (matrix) svg
15 C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer1e-13-3.214e+010.000058.08.06%1179.42.47%motif file (matrix) svg
16 A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-12-2.883e+010.0000216.030.00%8981.618.80%motif file (matrix) svg
17 G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-12-2.802e+010.0000117.016.25%3874.98.11%motif file (matrix) svg
18 T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-11-2.721e+010.000088.012.22%2578.35.40%motif file (matrix) svg
19 A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer1e-11-2.720e+010.000035.04.86%539.41.13%motif file (matrix) svg
20 A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-11-2.713e+010.0000159.022.08%6043.112.65%motif file (matrix) svg
21 A G C T A T G C G A C T G C A T C G T A A G C T G T A C C G A T A T C G A G T C Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer1e-10-2.397e+010.000077.010.69%2250.34.71%motif file (matrix) svg
22 C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-9-2.247e+010.0000145.020.14%5679.011.88%motif file (matrix) svg
23 C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer1e-9-2.228e+010.0000110.015.28%3901.18.16%motif file (matrix) svg
24 C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer1e-9-2.198e+010.000048.06.67%1127.72.36%motif file (matrix) svg
25 C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer1e-9-2.168e+010.000068.09.44%1967.04.12%motif file (matrix) svg
26 A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer1e-9-2.149e+010.000099.013.75%3414.77.15%motif file (matrix) svg
27 C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer1e-8-1.909e+010.0000103.014.31%3779.47.91%motif file (matrix) svg
28 A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-7-1.788e+010.000055.07.64%1583.83.31%motif file (matrix) svg
29 C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer1e-7-1.737e+010.000032.04.44%678.91.42%motif file (matrix) svg
30 A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer1e-7-1.659e+010.000026.03.61%490.11.03%motif file (matrix) svg
31 T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer1e-7-1.631e+010.000089.012.36%3283.36.87%motif file (matrix) svg
32 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer1e-6-1.529e+010.000047.06.53%1362.02.85%motif file (matrix) svg
33 G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer1e-6-1.510e+010.000040.05.56%1072.12.24%motif file (matrix) svg
34 G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer1e-6-1.506e+010.000032.04.44%753.31.58%motif file (matrix) svg
35 T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-6-1.504e+010.000048.06.67%1417.72.97%motif file (matrix) svg
36 A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer1e-6-1.399e+010.0000120.016.67%5118.010.71%motif file (matrix) svg
37 A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-5-1.320e+010.0000147.020.42%6709.114.04%motif file (matrix) svg
38 A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer1e-5-1.261e+010.000059.08.19%2070.94.33%motif file (matrix) svg
39 G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer1e-5-1.247e+010.000029.04.03%731.51.53%motif file (matrix) svg
40 T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer1e-5-1.236e+010.0000125.017.36%5570.811.66%motif file (matrix) svg
41 G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer1e-5-1.180e+010.000161.08.47%2226.44.66%motif file (matrix) svg
42 C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer1e-5-1.160e+010.000152.07.22%1801.93.77%motif file (matrix) svg
43 A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-4-1.101e+010.000152.07.22%1842.83.86%motif file (matrix) svg
44 C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-4-1.092e+010.0002166.023.06%8113.016.98%motif file (matrix) svg
45 C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-4-1.072e+010.000269.09.58%2718.65.69%motif file (matrix) svg
46 C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer1e-4-1.065e+010.000213.01.81%208.40.44%motif file (matrix) svg
47 G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-4-1.034e+010.000370.09.72%2804.55.87%motif file (matrix) svg
48 A G C T A G T C A G T C A C G T C T A G A C G T A C G T A C G T C G T A A G T C G A T C C G T A FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-4-1.004e+010.000331.04.31%923.41.93%motif file (matrix) svg
49 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer1e-4-9.694e+000.000525.03.47%682.21.43%motif file (matrix) svg
50 T C G A G A C T A G C T T G A C A G C T G T A C T C A G G A T C A T C G T G C A A C T G C T G A GFX(?)/Promoter/Homer1e-4-9.609e+000.00053.00.42%5.10.01%motif file (matrix) svg
51 C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer1e-4-9.455e+000.0006118.016.39%5537.711.59%motif file (matrix) svg
52 A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer1e-4-9.284e+000.000761.08.47%2432.25.09%motif file (matrix) svg
53 A G T C C T G A A G T C C G A T C A G T G A T C A T G C A C T G A T C G G A C T Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-3-8.939e+000.000957.07.92%2256.94.72%motif file (matrix) svg
54 C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer1e-3-8.715e+000.001147.06.53%1766.93.70%motif file (matrix) svg
55 G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer1e-3-8.710e+000.001149.06.81%1867.33.91%motif file (matrix) svg
56 A G C T T G A C C G A T C G A T C T A G A C G T C A G T C A G T G C T A A G T C FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer1e-3-8.300e+000.001660.08.33%2472.85.17%motif file (matrix) svg
57 C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer1e-3-8.148e+000.0018141.019.58%7069.514.79%motif file (matrix) svg
58 T C G A C T G A T A G C T G A C T C A G T C A G C G T A C G T A T C A G A G C T ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer1e-2-6.887e+000.006464.08.89%2838.25.94%motif file (matrix) svg
59 C T G A T G C A T A G C T G A C T A C G T C A G C T G A G C T A T C A G G A C T ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer1e-2-6.578e+000.008624.03.33%799.81.67%motif file (matrix) svg
60 G A T C C T G A A G T C C G A T C G A T G A T C A G T C A C T G A T C G A G C T Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer1e-2-6.577e+000.008625.03.47%846.01.77%motif file (matrix) svg
61 A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-6.554e+000.008665.09.03%2933.26.14%motif file (matrix) svg
62 T C G A T C G A T A G C G T A C T C A G T A C G C G T A C G T A T C A G A G C T GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer1e-2-6.325e+000.010542.05.83%1717.43.59%motif file (matrix) svg
63 C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-2-6.208e+000.0116233.032.36%13111.527.44%motif file (matrix) svg
64 A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer1e-2-6.042e+000.013531.04.31%1177.42.46%motif file (matrix) svg
65 A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer1e-2-5.903e+000.015394.013.06%4678.99.79%motif file (matrix) svg
66 A G T C A C G T A C T G A G C T A C G T A C G T G T C A A G T C Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer1e-2-5.774e+000.017195.013.19%4758.49.96%motif file (matrix) svg
67 T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-2-5.742e+000.017446.06.39%1989.44.16%motif file (matrix) svg
68 G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer1e-2-5.608e+000.019640.05.56%1682.73.52%motif file (matrix) svg
69 C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer1e-2-5.519e+000.021213.01.81%362.40.76%motif file (matrix) svg
70 C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-2-5.281e+000.026444.06.11%1933.04.05%motif file (matrix) svg
71 T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-2-5.000e+000.0345117.016.25%6212.413.00%motif file (matrix) svg
72 A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-2-4.758e+000.043447.06.53%2160.64.52%motif file (matrix) svg
73 T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-2-4.757e+000.043474.010.28%3702.77.75%motif file (matrix) svg
74 C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer1e-2-4.646e+000.047262.08.61%3025.86.33%motif file (matrix) svg