Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer | 1e-65 | -1.509e+02 | 0.0000 | 63.0 | 8.75% | 159.2 | 0.33% | motif file (matrix) |
svg |
2 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-36 | -8.449e+01 | 0.0000 | 179.0 | 24.86% | 4193.8 | 8.78% | motif file (matrix) |
svg |
3 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-36 | -8.316e+01 | 0.0000 | 184.0 | 25.56% | 4444.7 | 9.30% | motif file (matrix) |
svg |
4 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-33 | -7.789e+01 | 0.0000 | 131.0 | 18.19% | 2545.0 | 5.33% | motif file (matrix) |
svg |
5 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-32 | -7.556e+01 | 0.0000 | 170.0 | 23.61% | 4125.7 | 8.63% | motif file (matrix) |
svg |
6 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-32 | -7.465e+01 | 0.0000 | 80.0 | 11.11% | 999.8 | 2.09% | motif file (matrix) |
svg |
7 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-32 | -7.375e+01 | 0.0000 | 85.0 | 11.81% | 1150.2 | 2.41% | motif file (matrix) |
svg |
8 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-30 | -7.099e+01 | 0.0000 | 102.0 | 14.17% | 1718.3 | 3.60% | motif file (matrix) |
svg |
9 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-30 | -7.085e+01 | 0.0000 | 102.0 | 14.17% | 1721.1 | 3.60% | motif file (matrix) |
svg |
10 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-29 | -6.902e+01 | 0.0000 | 111.0 | 15.42% | 2065.7 | 4.32% | motif file (matrix) |
svg |
11 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-25 | -5.822e+01 | 0.0000 | 100.0 | 13.89% | 1956.5 | 4.09% | motif file (matrix) |
svg |
12 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-21 | -5.031e+01 | 0.0000 | 42.0 | 5.83% | 387.3 | 0.81% | motif file (matrix) |
svg |
13 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-19 | -4.601e+01 | 0.0000 | 315.0 | 43.75% | 13166.8 | 27.55% | motif file (matrix) |
svg |
14 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-14 | -3.285e+01 | 0.0000 | 169.0 | 23.47% | 6144.2 | 12.86% | motif file (matrix) |
svg |
15 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-13 | -3.214e+01 | 0.0000 | 58.0 | 8.06% | 1179.4 | 2.47% | motif file (matrix) |
svg |
16 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-12 | -2.883e+01 | 0.0000 | 216.0 | 30.00% | 8981.6 | 18.80% | motif file (matrix) |
svg |
17 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-12 | -2.802e+01 | 0.0000 | 117.0 | 16.25% | 3874.9 | 8.11% | motif file (matrix) |
svg |
18 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-11 | -2.721e+01 | 0.0000 | 88.0 | 12.22% | 2578.3 | 5.40% | motif file (matrix) |
svg |
19 |
| PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-11 | -2.720e+01 | 0.0000 | 35.0 | 4.86% | 539.4 | 1.13% | motif file (matrix) |
svg |
20 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-11 | -2.713e+01 | 0.0000 | 159.0 | 22.08% | 6043.1 | 12.65% | motif file (matrix) |
svg |
21 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-10 | -2.397e+01 | 0.0000 | 77.0 | 10.69% | 2250.3 | 4.71% | motif file (matrix) |
svg |
22 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-9 | -2.247e+01 | 0.0000 | 145.0 | 20.14% | 5679.0 | 11.88% | motif file (matrix) |
svg |
23 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-9 | -2.228e+01 | 0.0000 | 110.0 | 15.28% | 3901.1 | 8.16% | motif file (matrix) |
svg |
24 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-9 | -2.198e+01 | 0.0000 | 48.0 | 6.67% | 1127.7 | 2.36% | motif file (matrix) |
svg |
25 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-9 | -2.168e+01 | 0.0000 | 68.0 | 9.44% | 1967.0 | 4.12% | motif file (matrix) |
svg |
26 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-9 | -2.149e+01 | 0.0000 | 99.0 | 13.75% | 3414.7 | 7.15% | motif file (matrix) |
svg |
27 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-8 | -1.909e+01 | 0.0000 | 103.0 | 14.31% | 3779.4 | 7.91% | motif file (matrix) |
svg |
28 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-7 | -1.788e+01 | 0.0000 | 55.0 | 7.64% | 1583.8 | 3.31% | motif file (matrix) |
svg |
29 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.737e+01 | 0.0000 | 32.0 | 4.44% | 678.9 | 1.42% | motif file (matrix) |
svg |
30 |
| Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer | 1e-7 | -1.659e+01 | 0.0000 | 26.0 | 3.61% | 490.1 | 1.03% | motif file (matrix) |
svg |
31 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-7 | -1.631e+01 | 0.0000 | 89.0 | 12.36% | 3283.3 | 6.87% | motif file (matrix) |
svg |
32 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-6 | -1.529e+01 | 0.0000 | 47.0 | 6.53% | 1362.0 | 2.85% | motif file (matrix) |
svg |
33 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-6 | -1.510e+01 | 0.0000 | 40.0 | 5.56% | 1072.1 | 2.24% | motif file (matrix) |
svg |
34 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-6 | -1.506e+01 | 0.0000 | 32.0 | 4.44% | 753.3 | 1.58% | motif file (matrix) |
svg |
35 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-6 | -1.504e+01 | 0.0000 | 48.0 | 6.67% | 1417.7 | 2.97% | motif file (matrix) |
svg |
36 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-6 | -1.399e+01 | 0.0000 | 120.0 | 16.67% | 5118.0 | 10.71% | motif file (matrix) |
svg |
37 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-5 | -1.320e+01 | 0.0000 | 147.0 | 20.42% | 6709.1 | 14.04% | motif file (matrix) |
svg |
38 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-5 | -1.261e+01 | 0.0000 | 59.0 | 8.19% | 2070.9 | 4.33% | motif file (matrix) |
svg |
39 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.247e+01 | 0.0000 | 29.0 | 4.03% | 731.5 | 1.53% | motif file (matrix) |
svg |
40 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-5 | -1.236e+01 | 0.0000 | 125.0 | 17.36% | 5570.8 | 11.66% | motif file (matrix) |
svg |
41 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-5 | -1.180e+01 | 0.0001 | 61.0 | 8.47% | 2226.4 | 4.66% | motif file (matrix) |
svg |
42 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-5 | -1.160e+01 | 0.0001 | 52.0 | 7.22% | 1801.9 | 3.77% | motif file (matrix) |
svg |
43 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-4 | -1.101e+01 | 0.0001 | 52.0 | 7.22% | 1842.8 | 3.86% | motif file (matrix) |
svg |
44 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-4 | -1.092e+01 | 0.0002 | 166.0 | 23.06% | 8113.0 | 16.98% | motif file (matrix) |
svg |
45 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-4 | -1.072e+01 | 0.0002 | 69.0 | 9.58% | 2718.6 | 5.69% | motif file (matrix) |
svg |
46 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-4 | -1.065e+01 | 0.0002 | 13.0 | 1.81% | 208.4 | 0.44% | motif file (matrix) |
svg |
47 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-4 | -1.034e+01 | 0.0003 | 70.0 | 9.72% | 2804.5 | 5.87% | motif file (matrix) |
svg |
48 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-4 | -1.004e+01 | 0.0003 | 31.0 | 4.31% | 923.4 | 1.93% | motif file (matrix) |
svg |
49 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-4 | -9.694e+00 | 0.0005 | 25.0 | 3.47% | 682.2 | 1.43% | motif file (matrix) |
svg |
50 |
| GFX(?)/Promoter/Homer | 1e-4 | -9.609e+00 | 0.0005 | 3.0 | 0.42% | 5.1 | 0.01% | motif file (matrix) |
svg |
51 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-4 | -9.455e+00 | 0.0006 | 118.0 | 16.39% | 5537.7 | 11.59% | motif file (matrix) |
svg |
52 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-4 | -9.284e+00 | 0.0007 | 61.0 | 8.47% | 2432.2 | 5.09% | motif file (matrix) |
svg |
53 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.939e+00 | 0.0009 | 57.0 | 7.92% | 2256.9 | 4.72% | motif file (matrix) |
svg |
54 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-3 | -8.715e+00 | 0.0011 | 47.0 | 6.53% | 1766.9 | 3.70% | motif file (matrix) |
svg |
55 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-3 | -8.710e+00 | 0.0011 | 49.0 | 6.81% | 1867.3 | 3.91% | motif file (matrix) |
svg |
56 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-3 | -8.300e+00 | 0.0016 | 60.0 | 8.33% | 2472.8 | 5.17% | motif file (matrix) |
svg |
57 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-3 | -8.148e+00 | 0.0018 | 141.0 | 19.58% | 7069.5 | 14.79% | motif file (matrix) |
svg |
58 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -6.887e+00 | 0.0064 | 64.0 | 8.89% | 2838.2 | 5.94% | motif file (matrix) |
svg |
59 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.578e+00 | 0.0086 | 24.0 | 3.33% | 799.8 | 1.67% | motif file (matrix) |
svg |
60 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.577e+00 | 0.0086 | 25.0 | 3.47% | 846.0 | 1.77% | motif file (matrix) |
svg |
61 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.554e+00 | 0.0086 | 65.0 | 9.03% | 2933.2 | 6.14% | motif file (matrix) |
svg |
62 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -6.325e+00 | 0.0105 | 42.0 | 5.83% | 1717.4 | 3.59% | motif file (matrix) |
svg |
63 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -6.208e+00 | 0.0116 | 233.0 | 32.36% | 13111.5 | 27.44% | motif file (matrix) |
svg |
64 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-2 | -6.042e+00 | 0.0135 | 31.0 | 4.31% | 1177.4 | 2.46% | motif file (matrix) |
svg |
65 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-2 | -5.903e+00 | 0.0153 | 94.0 | 13.06% | 4678.9 | 9.79% | motif file (matrix) |
svg |
66 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-2 | -5.774e+00 | 0.0171 | 95.0 | 13.19% | 4758.4 | 9.96% | motif file (matrix) |
svg |
67 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-2 | -5.742e+00 | 0.0174 | 46.0 | 6.39% | 1989.4 | 4.16% | motif file (matrix) |
svg |
68 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.608e+00 | 0.0196 | 40.0 | 5.56% | 1682.7 | 3.52% | motif file (matrix) |
svg |
69 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -5.519e+00 | 0.0212 | 13.0 | 1.81% | 362.4 | 0.76% | motif file (matrix) |
svg |
70 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.281e+00 | 0.0264 | 44.0 | 6.11% | 1933.0 | 4.05% | motif file (matrix) |
svg |
71 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.000e+00 | 0.0345 | 117.0 | 16.25% | 6212.4 | 13.00% | motif file (matrix) |
svg |
72 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.758e+00 | 0.0434 | 47.0 | 6.53% | 2160.6 | 4.52% | motif file (matrix) |
svg |
73 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -4.757e+00 | 0.0434 | 74.0 | 10.28% | 3702.7 | 7.75% | motif file (matrix) |
svg |
74 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.646e+00 | 0.0472 | 62.0 | 8.61% | 3025.8 | 6.33% | motif file (matrix) |
svg |