Information for 21-AAGCCTATAGAGA (Motif 36)

C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A
Reverse Opposite:
G A C T T A G C C G A T A G T C A G C T T G C A A C G T C T G A A C T G T C A G A T G C C A G T A C G T
p-value:1e-6
log p-value:-1.573e+01
Information Content per bp:1.676
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif153.7
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets33.5 +/- 26.3bp
Average Position of motif in Background49.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AAGCCTATAGAGA
AAGGATATNTN--
 C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:2
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCTATAGAGA-
NAGNTCTCGCGAGAN
 A C G T C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A A C G T
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AAGCCTATAGAGA-----
---TTGACCGAGAATTCC
 C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AAGCCTATAGAGA------
----GTATAAAAGGCGGGG
 C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AAGCCTATAGAGA------
----GTATAAAAGGCGGGG
 C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.49
Offset:-6
Orientation:reverse strand
Alignment:------AAGCCTATAGAGA
NNGGCCACGCCTTTN----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AAGCCTATAGAGA
CAAGCTT-------
 A C G T C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--AAGCCTATAGAGA
CNAGGCCT-------
 A C G T A C G T C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:9
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---AAGCCTATAGAGA
TAGAANVTTCTAGAA-
 A C G T A C G T A C G T C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:forward strand
Alignment:AAGCCTATAGAGA-
--CCTTTTATAGNC
 C G T A G C T A A T C G A G T C G T A C A G C T T C G A A C G T C T G A T C A G C G T A A T C G C T G A A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C