Information for 20-CATCAAGGATCAC (Motif 35)

G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C
Reverse Opposite:
A C T G A C G T T A C G T C G A G C A T A G T C A G T C G C A T C G A T C T A G C G T A C G A T A C T G
p-value:1e-8
log p-value:-1.910e+01
Information Content per bp:1.680
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif284.6
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets46.8 +/- 25.3bp
Average Position of motif in Background46.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CATCAAGGATCAC
TCACCCATCAATAAACA-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CATCAAGGATCAC
-----NGGATTAN
 G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C
A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

NKX6-2/MA0675.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CATCAAGGATCAC
CTAATTAA-------
 A C G T A C G T G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CATCAAGGATCAC
GGCCATTAAC------
 A C G T A C G T A C G T G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CATCAAGGATCAC---
TCTCAAAGGTCACCTG
 G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CATCAAGGATCAC----
NTNNNGGGGTCANGNNN
 G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CATCAAGGATCAC
CCAATCAA-------
 A C G T A C G T G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CATCAAGGATCAC----
CTCCAGGGGTCAATTGA
 G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

HOXB2/MA0902.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CATCAAGGATCAC
AGTAATTAAC------
 A C G T A C G T A C G T G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C
T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CATCAAGGATCAC---
TCTCAAAGGTCACGAG
 G T A C C G T A C G A T A G T C G C T A C G T A C T A G T C A G C G T A A G C T A G T C G T C A T G A C A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G