Information for 2-CCTGCTGGGW (Motif 3)

A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A
Reverse Opposite:
C G A T T G A C G T A C T G A C C G T A T A C G A T G C C T G A C A T G T C A G
p-value:1e-31
log p-value:-7.262e+01
Information Content per bp:1.603
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif17.22%
Number of Background Sequences with motif2431.8
Percentage of Background Sequences with motif5.09%
Average Position of motif in Targets49.0 +/- 26.8bp
Average Position of motif in Background51.1 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGW
CCCCCTGCTGTG-
 A C G T A C G T A C G T A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.91
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGGGW
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGW--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGW--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCTGCTGGGW
CCTGCTGAGH
 A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGGGW--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCTGGGW-
NVCAGCTGBBNN
 A C G T A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A A C G T
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCTGCTGGGW
CCAGCTGTTN
 A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCTGCTGGGW
HCAGCTGDTN
 A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGGGW
GACCCCCCGCTGTG-
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C G A C T T A C G A T G C G C A T A C T G C A T G A C T G G C T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T