Information for 12-CTMTTWGTGCYTRAKW (Motif 15)

A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
Reverse Opposite:
C G A T T G C A A C G T A G T C C G T A C T G A A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C T G C G T A A C T G
p-value:1e-13
log p-value:-3.178e+01
Information Content per bp:1.853
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.3 +/- 20.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTMTTWGTGCYTRAKW
-YCTTTGTTCC-----
 A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTMTTWGTGCYTRAKW
--TTAAGTGCTT----
 A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTMTTWGTGCYTRAKW
CTTTAAGTACTTAATG
 A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

PB0096.1_Zfp187_1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTMTTWGTGCYTRAKW
TTATTAGTACATAN--
 A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTMTTWGTGCYTRAKW
-CCWTTGTYYB-----
 A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTMTTWGTGCYTRAKW
NNNNTTGTGTGCTTNN--
 A C G T A C G T A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTMTTWGTGCYTRAKW
TNNTCCTTTGTTCTNNT--
 A C G T A C G T A C G T A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTMTTWGTGCYTRAKW
NNNTCCTTTGTTCTNNN--
 A C G T A C G T A C G T A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CTMTTWGTGCYTRAKW-------
---TTTMCGCTTSABTGAACACN
 A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTMTTWGTGCYTRAKW
-CCTTTGTTTT-----
 A G T C A C G T G T A C C G A T A C G T C G A T A C T G A C G T A C T G A G T C A G C T A C G T C T A G C G T A A C G T C G T A
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T